1561 IT & Software Developer jobs in Germany
Software Developer (M/F/X) - Interoperability for Omics Methods
45.000 - 70.000 €
Deutsches Krebsforschungszentrum DKFZ
Im Neuenheimer Feld, Heidelberg
45.000 - 70.000 €
Requirements
Must:
- An M.Sc. or equivalent in computer science, statistics, mathematics, physics, engineering, or a biological science with demonstrated experience in statistics and software development
- Software development skills in Python and familiarity with the data science and geospatial Python stack (e.g., xarray, dask; GeoPandas/Shapely a plus)
- Open-source development practices: Git/GitHub, code review, testing (e.g., pytest), packaging, CI/CD (e.g., GitHub Actions), and documentation (e.g., Sphinx)
- Excellent collaboration and communication skills; motivation to contribute to a scientific, community-driven project as a supportive, creative, and responsible team member
- Experience with R/Bioconductor, AnnData/SummarizedExperiment, Zarr/NGFF, or designing cross-language APIs and data schemas (preferred)
- Research experience implementing statistical learning or machine learning (e.g., Bayesian inference, deep learning), ideally connected to spatial omics, and experience with frameworks like PyTorch, Keras, Pyro, or TensorFlow (preferred)
Responsibilities
- Expand the bridge between the scverse and R/Bioconductor ecosystems through interoperable software development focused on the OME-Zarr file format and the SpatialData framework
- Build and automate an infrastructure to ensure continued interoperability of SpatialData across R/Python, including robust converters, I/O layers, and validation tests
- Improve the documentation of the SpatialData format with clear tutorials, examples, and contributor guides that lower the barrier to entry
- Contribute to the NGFF specification and help support the incoming versions, in particular NGFF 0.6/RFC-5 and RFC-8, via updates to the SpatialData codebase, but also by contributing to the NGFF codebase
- Engage with the open-source scverse and NGFF communities: triage issues; review PRs; collaborate in public forums and with the possibility to participate in cross-consortium events, sprints, and hackathons
Description
We are the German Cancer Research Center (DKFZ), one of Europes largest cancer research centers committed to Research for a life without cancer. Our mission, driven by world-class scientists, involves investigating cancer development, identifying risk factors, and exploring new prevention strategies. As part of the Division of Computational Genomics and Systems Genetics, we are seeking a Software Developer focused on interoperability for Single-Cell and Spatial Omics Methods. Located in Heidelberg, we offer excellent conditions including state-of-the-art equipment, flexible working hours, 30 vacation days, and opportunities for professional growth and networking within a vibrant team. Join us in making meaningful contributions to biomedical research.
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The company with most openings is E.ON Grid Solutions GmbH as they are hiring for 108 different Python Developer jobs in Germany. They are probably quite committed to find good Python Developers.